getSynergyGroups.m

% This function is part of the NMSM Pipeline, see file for full license.
%
% This function parses the synergy groups from the XML tree.
%
% (struct, Model) -> (None)
% parses synergy groups from XML tree


function groups = getSynergyGroups(tree, model)
synergySetTree = getFieldByNameOrError(tree, "RCNLSynergySet");
groupsTree = getFieldByNameOrError(synergySetTree, "RCNLSynergy");
groups = {};
for i=1:length(groupsTree)
    if(length(groupsTree) == 1)
        group = groupsTree;
    else
        group = groupsTree{i};
    end
    groups{i}.numSynergies = ...
        str2double(group.num_synergies.Text);
    groupMembers = model.getForceSet().getGroup( ...
        group.muscle_group_name.Text).getMembers();
    muscleNames = string([]);
    for j=0:groupMembers.getSize() - 1
        muscleNames(end + 1) = groupMembers.get(j);
    end
    groups{i}.muscleNames = muscleNames;
    groups{i}.muscleGroupName = group.muscle_group_name.Text;
end
end