groupNamesToGroups.m

% This function is part of the NMSM Pipeline, see file for full license.
%
% This function takes a list of muscle group names and returns a cell
% array of the muscle indices in each group.
%
% (array of string, Model) -> (cell array of num arrays)
% parses synergy groups from XML tree


function groups = groupNamesToGroups(groupNames, model)
groups = {};
model = Model(model);
for i=1:length(groupNames)
    group = [];
    for j=0:model.getForceSet().getGroup(groupNames(i)).getMembers().getSize()-1
        count = 1;
        for k=0:model.getForceSet().getMuscles().getSize()-1
            if strcmp(model.getForceSet().getMuscles().get(k).getName() ...
                    .toCharArray', model.getForceSet().getGroup( ...
                    groupNames(i)).getMembers().get(j))
                break
            end
            if(model.getForceSet().getMuscles().get(k).get_appliesForce())
                count = count + 1;
            end
        end
        group(end+1) = count;
    end
    groups{end + 1} = group;
end
end