getMuscleSpecificSurrogateModelData.m

% This function is part of the NMSM Pipeline, see file for full license.
%
% () -> ()
% 


function inputs = getMuscleSpecificSurrogateModelData(inputs)

for i = 1:inputs.numMuscles
    counter = 1;
    for j = 1:length(inputs.coordinateNames)
        for k = 1:length(inputs.surrogateModelCoordinateNames)
            if strcmp(inputs.coordinateNames(j), inputs.surrogateModelCoordinateNames(k))
                if range(inputs.momentArms(:,k,i)) > inputs.epsilon
                    inputs.surrogateModelLabels{i}(counter) = ...
                        inputs.coordinateNames(j);
                    inputs.muscleSpecificJointAngles{i}(:,counter) = ...
                        inputs.experimentalJointAngles(:,j);
                    inputs.muscleSpecificMomentArms{i}(:,counter) = ...
                        inputs.momentArms(:,k,i);
                    if isfield(inputs, 'experimentalJointVelocities')
                        inputs.muscleSpecificJointVelocities{i}(:,counter) = ...
                            inputs.experimentalJointVelocities(:,j);
                    end
                    counter = counter + 1;
                end
            end
        end
    end
end
end