calcSynergyExtrapolationMuscleActivationCost.m

% This function is part of the NMSM Pipeline, see file for full license.
%
% (Array of number, struct) -> (Array of number)
% returns the cost for all rounds of the Muscle Tendon optimization


function cost = calcSynergyExtrapolationMuscleActivationCost( ...
    modeledValues, experimentalData, costTerm)
errorCenter = valueOrAlternate(costTerm, "errorCenter", 0);
maximumAllowableError = valueOrAlternate(costTerm, "maxAllowableError", 0.3);
cost = calcDeviationCostTerm(...
    modeledValues.muscleActivations(:, ...
    [experimentalData.synergyExtrapolation.missingEmgChannelGroups{:}], ...
    :), errorCenter, maximumAllowableError);
end