calcEmgScaleFactorGroupedSimilarityCost.m

% This function is part of the NMSM Pipeline, see file for full license.
%
% (Array of number, struct) -> (Array of number)
% returns the cost for all rounds of the Muscle Tendon optimization


function cost = calcEmgScaleFactorGroupedSimilarityCost( ...
    values, experimentalData, costTerm)
errorCenter = valueOrAlternate(costTerm, "errorCenter", 0);
maximumAllowableError = valueOrAlternate(costTerm, "maxAllowableError", 0.1);
emgScaleDeviations = calcDifferencesInEmgGroups(values.emgScaleFactors, ...
    experimentalData.activationGroups);
cost = calcDeviationCostTerm(emgScaleDeviations, ...
    errorCenter, maximumAllowableError);
end