calcMtpSynXModeledValues.m

% This function is part of the NMSM Pipeline, see file for full license.
%
%
% (struct, struct, struct) -> (struct)
% returns the synergy extrapolation modeled values for the given inputs 
% for MTP


function modeledValues = calcMtpSynXModeledValues(values, ...
    experimentalData, params)
[modeledValues.muscleExcitations, modeledValues.muscleExcitationsNoTDelay] = ...
    calcMuscleExcitationsSynX(experimentalData, ...
    values.electromechanicalDelays, values.emgScaleFactors, ...
    values.synergyWeights, experimentalData.synergyExtrapolation);
neuralActivations = calcNeuralActivations(modeledValues.muscleExcitations, ...
    values.activationTimeConstants, experimentalData.emgTime, ...
    experimentalData.numPaddingFrames);
modeledValues.muscleActivations = calcMuscleActivations( ...
    neuralActivations, values.activationNonlinearityConstants);
[modeledValues.normalizedFiberLength, ...
    modeledValues.normalizedFiberVelocity] = ...
    calcNormalizedMuscleFiberLengthsAndVelocities(experimentalData, ...
    values.optimalFiberLengthScaleFactors, ...
    values.tendonSlackLengthScaleFactors);
modeledValues.passiveForce = calcPassiveForceLengthCurve( ...
    modeledValues.normalizedFiberLength, ...
    experimentalData.maxIsometricForce, ...
    experimentalData.pennationAngle);
modeledValues.muscleJointMoments = calcMuscleJointMoments( ...
    experimentalData, modeledValues.muscleActivations, ...
    modeledValues.normalizedFiberLength, ...
    modeledValues.normalizedFiberVelocity);
end