makeMuscleTendonLengthInitializationValuesAsStruct.m

% This function is part of the NMSM Pipeline, see file for full license.
%
%
% (Array of number, struct) -> (struct)
% Gather optimization values into a struct for use in cost function


function values = makeMuscleTendonLengthInitializationValuesAsStruct(parameterChange, ...
    experimentalData)

values.optimalFiberLengthScaleFactors = parameterChange(:, 1 : ...
    length(experimentalData.muscleNames));
values.tendonSlackLengthScaleFactors = ...
    parameterChange(:, length(experimentalData.muscleNames) + 1 : 2 * ...
    length(experimentalData.muscleNames));
values.maxNormalizedFiberLength = ...
    parameterChange(:, 2 * length(experimentalData.muscleNames) + 1 : 2 * ...
    length(experimentalData.muscleNames) + ...
    experimentalData.numMuscleGroups + ...
    experimentalData.numMusclesIndividual);
if experimentalData.maximumMuscleStressIsIncluded
    values.maximumMuscleStressScaleFactor = parameterChange(:, end);
else
    values.maximumMuscleStressScaleFactor = 1;
end
end