calcMuscleTendonLengthInitializationModeledValues.m

% This function is part of the NMSM Pipeline, see file for full license.
%
%
% (struct, struct, struct) -> (struct)
% returns the modeled values for the given inputs for MuscleTendonLengthInitialization


function modeledValues = calcMuscleTendonLengthInitializationModeledValues(values, ...
    experimentalData)

modeledValues.maxIsometricForce = getMaxIsometricForce(...
    experimentalData, values);
modeledValues.normalizedFiberLength = ...
    calcNormalizedMuscleFiberLengthsAndVelocities(experimentalData, ...
    values.optimalFiberLengthScaleFactors, ...
    values.tendonSlackLengthScaleFactors);
modeledValues.passiveForce = calcPassiveForceLengthCurve( ...
    modeledValues.normalizedFiberLength, ...
    modeledValues.maxIsometricForce, experimentalData.pennationAngle);

if experimentalData.passiveMomentDataExists
    experimentalData.muscleTendonLength = ...
        experimentalData.passiveMuscleTendonLength;
    modeledValues.passiveNormalizedFiberLength = ...
        calcNormalizedMuscleFiberLengthsAndVelocities(experimentalData, ...
        values.optimalFiberLengthScaleFactors, ...
        values.tendonSlackLengthScaleFactors);
    experimentalData.momentArms = experimentalData.passiveMomentArms;
    modeledValues.passiveModelMoments = calcPassiveMuscleMoments( ...
        experimentalData, modeledValues.maxIsometricForce, ...
        modeledValues.passiveNormalizedFiberLength);
end
end